name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
s__Phocaeicola dorei	1673	S	778	2215	2993	0.09902
s__Phocaeicola plebeius_A	1668	S	675	830	1505	0.04979
s__Phocaeicola coprocola	1676	S	397	167	564	0.01866
s__Phocaeicola massiliensis	1853	S	276	191	467	0.01545
s__Phocaeicola plebeius	1669	S	79	82	161	0.00533
s__Phocaeicola coprophilus	1756	S	18	2	20	0.00066
s__Phocaeicola sp900542985	1911	S	13	0	13	0.00043
s__Phocaeicola sp900544075	1758	S	12	0	12	0.00040
s__Bacteroides uniformis	1658	S	514	754	1268	0.04195
s__Bacteroides cellulosilyticus	1786	S	276	91	367	0.01214
s__Bacteroides ovatus	1679	S	269	469	738	0.02442
s__Bacteroides caccae	1799	S	239	165	404	0.01337
s__Bacteroides stercoris	1651	S	186	74	260	0.00860
s__Bacteroides fragilis	1776	S	168	66	234	0.00774
s__Bacteroides xylanisolvens	1680	S	118	207	325	0.01075
s__Bacteroides thetaiotaomicron	1794	S	84	51	135	0.00447
s__Bacteroides eggerthii	1806	S	71	26	97	0.00321
s__Bacteroides finegoldii	2036	S	45	23	68	0.00225
s__Bacteroides intestinalis	1788	S	40	12	52	0.00172
s__Bacteroides nordii	1729	S	31	2	33	0.00109
s__Bacteroides sp003545565	2014	S	29	3	32	0.00106
s__Bacteroides sp902362375	1681	S	17	4	21	0.00069
s__Bacteroides sp900066265	2037	S	13	2	15	0.00050
s__Bacteroides fragilis_A	1793	S	10	1	11	0.00036
s__Prevotella sp900557255	1732	S	1378	518	1896	0.06273
s__Prevotella stercorea	1688	S	256	36	292	0.00966
s__Prevotella sp000436915	1838	S	66	7	73	0.00242
s__Prevotella copri_A	1770	S	46	16	62	0.00205
s__Prevotella sp000434975	1689	S	15	2	17	0.00056
s__Prevotella hominis	1852	S	11	2	13	0.00043
s__Paraprevotella clara	1654	S	1228	366	1594	0.05274
s__Paraprevotella xylaniphila	1655	S	42	31	73	0.00242
s__Prevotellamassilia sp900539625	1719	S	238	7	245	0.00811
s__Parabacteroides distasonis	1652	S	538	96	634	0.02098
s__Parabacteroides merdae	1660	S	244	199	443	0.01466
s__Parabacteroides goldsteinii	1811	S	39	2	41	0.00136
s__Parabacteroides johnsonii	1661	S	12	1	13	0.00043
s__Alistipes putredinis	1656	S	264	316	580	0.01919
s__Alistipes shahii	1644	S	99	160	259	0.00857
s__Alistipes finegoldii	1757	S	77	43	120	0.00397
s__Alistipes onderdonkii	1678	S	35	36	71	0.00235
s__Alistipes_A ihumii	1646	S	14	1	15	0.00050
s__Alistipes_A indistinctus	1657	S	10	1	11	0.00036
s__Barnesiella intestinihominis	1653	S	165	19	184	0.00609
s__Odoribacter splanchnicus	1675	S	89	33	122	0.00404
s__Butyricimonas faecihominis	1734	S	12	6	18	0.00060
s__CAG-279 sp000437795	1722	S	73	5	78	0.00258
s__Sodaliphilus sp004557565	1801	S	19	0	19	0.00063
s__Coprobacter fastidiosus	1735	S	21	3	24	0.00079
s__RC9 sp000435075	1765	S	16	0	16	0.00053
s__Porphyromonas sp900538385	1751	S	12	4	16	0.00053
s__Enterocloster lavalensis	3878	S	480	12	492	0.01628
s__Enterocloster bolteae	3643	S	368	92	460	0.01522
s__Enterocloster aldenensis	3803	S	183	26	209	0.00691
s__Enterocloster asparagiformis	3877	S	117	7	124	0.00410
s__Enterocloster clostridioformis	3642	S	83	19	102	0.00337
s__Enterocloster citroniae	3872	S	25	1	26	0.00086
s__Enterocloster sp001517625	3576	S	11	5	16	0.00053
s__Hungatella sp005845265	3602	S	193	23	216	0.00715
s__Hungatella effluvii	3799	S	127	7	134	0.00443
s__CAG-510 sp000434615	3724	S	218	10	228	0.00754
s__Lachnospira rogosae_A	3539	S	59	40	99	0.00328
s__Lachnospira eligens_A	3513	S	42	47	89	0.00294
s__Lachnospira sp003537285	3514	S	15	14	29	0.00096
s__Clostridium_Q symbiosum	3663	S	106	10	116	0.00384
s__Clostridium_Q sp003024715	3569	S	12	6	18	0.00060
s__Acetatifactor sp900066365	3552	S	43	57	100	0.00331
s__Acetatifactor sp900066565	3553	S	28	40	68	0.00225
s__Coprococcus sp000433075	3689	S	71	6	77	0.00255
s__Eubacterium_F sp003491505	3568	S	85	15	100	0.00331
s__Ruminococcus_B gnavus	3719	S	81	81	162	0.00536
s__CAG-127 sp900319515	3533	S	70	44	114	0.00377
s__Blautia_A wexlerae_A	3683	S	21	48	69	0.00228
s__UMGS1375 sp900066615	3529	S	55	25	80	0.00265
s__Mediterraneibacter torques	3521	S	40	37	77	0.00255
s__Roseburia inulinivorans	3591	S	30	38	68	0.00225
s__Agathobacter rectalis	3541	S	22	12	34	0.00112
s__Agathobacter faecis	3574	S	18	22	40	0.00132
s__Eisenbergiella sp900066775	3520	S	30	11	41	0.00136
s__Unknown_2207	3726	S	30	2	32	0.00106
s__Fusicatenibacter saccharivorans	3517	S	36	50	86	0.00285
s__UC5-1-2E3 sp001304875	3922	S	33	0	33	0.00109
s__TF01-11 sp003529475	3614	S	17	3	20	0.00066
s__COE1 sp001916965	3738	S	22	2	24	0.00079
s__UMGS2037 sp900557385	5813	S	14	2	16	0.00053
s__Clostridium_AP scindens	3649	S	16	0	16	0.00053
s__CAG-603 sp900066105	3751	S	15	0	15	0.00050
s__Faecalimonas phoceensis	3725	S	10	3	13	0.00043
s__Merdimonas faecis	3714	S	12	0	12	0.00040
s__Anaerostipes hadrus	3523	S	10	4	14	0.00046
s__Anaerotignum faecicola	3527	S	14	1	15	0.00050
s__Faecalibacterium prausnitzii_G	4303	S	138	102	240	0.00794
s__Faecalibacterium prausnitzii_C	4177	S	76	53	129	0.00427
s__Faecalibacterium prausnitzii_E	4255	S	41	13	54	0.00179
s__Faecalibacterium prausnitzii_D	4326	S	38	64	102	0.00337
s__Faecalibacterium prausnitzii	4190	S	21	27	48	0.00159
s__Faecalibacterium sp900539945	4362	S	10	9	19	0.00063
s__Gemmiger qucibialis	4176	S	59	44	103	0.00341
s__Gemmiger formicilis	4252	S	48	52	100	0.00331
s__Ruminococcus_D bicirculans	4247	S	127	26	153	0.00506
s__CAG-115 sp003507295	4439	S	44	3	47	0.00156
s__Ruminococcus_C sp000980705	4223	S	40	13	53	0.00175
s__Ruthenibacterium lactatiformans	4205	S	21	8	29	0.00096
s__Ruminiclostridium_E siraeum	4182	S	19	7	26	0.00086
s__UBA5884 sp900551505	4565	S	22	0	22	0.00073
s__Angelakisella sp900547385	4267	S	18	3	21	0.00069
s__CAG-110 sp900540635	4244	S	124	14	138	0.00457
s__CAG-110 sp000434635	4306	S	110	46	156	0.00516
s__CAG-110 sp000435995	4381	S	27	3	30	0.00099
s__CAG-110 sp900544945	4528	S	18	1	19	0.00063
s__CAG-110 sp003525905	4228	S	13	4	17	0.00056
s__CAG-83 sp000435555	4348	S	55	31	86	0.00285
s__CAG-83 sp900554275	4728	S	21	5	26	0.00086
s__CAG-83 sp001916855	4375	S	17	13	30	0.00099
s__ER4 sp000765235	4272	S	39	36	75	0.00248
s__ER4 sp003522105	4351	S	27	7	34	0.00112
s__ER4 sp900317525	4227	S	26	18	44	0.00146
s__CAG-170 sp000432135	4337	S	29	24	53	0.00175
s__CAG-170 sp900545925	4338	S	10	10	20	0.00066
s__Dysosmobacter sp001916835	4342	S	29	22	51	0.00169
s__Dysosmobacter welbionis	4178	S	16	19	35	0.00116
s__Lawsonibacter sp900066825	4231	S	27	17	44	0.00146
s__Lawsonibacter asaccharolyticus	4500	S	15	4	19	0.00063
s__Flavonifractor plautii	4250	S	25	19	44	0.00146
s__Ruminococcus_E sp003526955	4209	S	97	65	162	0.00536
s__Ruminococcus_E sp003438075	4210	S	14	6	20	0.00066
s__Ruminococcus_E bromii_B	4211	S	10	7	17	0.00056
s__CAG-177 sp000431775	4358	S	43	3	46	0.00152
s__CAG-217 sp000436335	4179	S	35	2	37	0.00122
s__CAG-180 sp004556705	4420	S	17	1	18	0.00060
s__CAG-180 sp000432435	4187	S	12	2	14	0.00046
s__UBA1417 sp003531055	4188	S	27	5	32	0.00106
s__UMGS1071 sp900542375	4224	S	15	3	18	0.00060
s__Pseudoruminococcus massiliensis	4371	S	21	3	24	0.00079
s__Eubacterium_R sp000434995	4264	S	12	1	13	0.00043
s__CAG-390 sp000437015	4451	S	81	11	92	0.00304
s__Unknown_4741	5196	S	76	0	76	0.00251
s__CAG-273 sp000438355	5129	S	29	5	34	0.00112
s__CAG-273 sp003534295	5139	S	12	3	15	0.00050
s__CAG-41 sp900066215	4109	S	15	6	21	0.00069
s__Clostridium tertium	2440	S	10	0	10	0.00033
s__UMGS775 sp900545325	2289	S	456	25	481	0.01591
s__QALS01 sp003150575	2309	S	387	116	503	0.01664
s__QALS01 sp900555925	2334	S	16	3	19	0.00063
s__UBA11524 sp000437595	2251	S	169	16	185	0.00612
s__Phil1 sp001940855	2259	S	34	5	39	0.00129
s__PeH17 sp000435055	2249	S	30	4	34	0.00112
s__SFEL01 sp004557245	2260	S	10	2	12	0.00040
s__Unknown_0730	2315	S	28	0	28	0.00093
s__Enterococcus_B faecium	3977	S	1785	1331	3116	0.10309
s__Enterococcus_B lactis	3976	S	69	42	111	0.00367
s__Enterococcus faecalis	3968	S	14	1	15	0.00050
s__Enterococcus_A avium	4013	S	10	1	11	0.00036
s__Ligilactobacillus ruminis	3967	S	11	0	11	0.00036
s__UMGS268 sp900540705	1513	S	401	5	406	0.01343
s__Clostridium_AQ innocuum	3354	S	177	13	190	0.00629
s__Massiliomicrobiota sp002160865	3370	S	31	2	33	0.00109
s__Erysipelatoclostridium ramosum	3368	S	16	3	19	0.00063
s__CAG-302 sp001916775	4938	S	13	6	19	0.00063
s__CAG-460 sp000437315	4945	S	17	2	19	0.00063
s__Escherichia coli_D	3231	S	684	108	792	0.02620
s__Klebsiella pneumoniae	3228	S	35	22	57	0.00189
s__Klebsiella variicola	3229	S	35	12	47	0.00156
s__Raoultella ornithinolytica	3247	S	83	2	85	0.00281
s__Sutterella wadsworthensis	2126	S	47	5	52	0.00172
s__Unknown_0595	2140	S	22	0	22	0.00073
s__Duodenibacillus sp900538905	2130	S	13	3	16	0.00053
s__CAG-495 sp000436375	4898	S	81	2	83	0.00275
s__Phascolarctobacterium faecium	1515	S	176	21	197	0.00652
s__Phascolarctobacterium_A succinatutens	1517	S	31	20	51	0.00169
s__Megasphaera elsdenii	5331	S	17	5	22	0.00073
s__Megamonas funiformis	5089	S	12	0	12	0.00040
s__Bilophila wadsworthia	3183	S	99	9	108	0.00357
s__Bilophila sp902373525	3204	S	18	0	18	0.00060
s__Desulfovibrio desulfuricans	3199	S	18	0	18	0.00060
s__Desulfovibrio sp900556755	3188	S	15	3	18	0.00060
s__Desulfovibrio fairfieldensis	3195	S	14	0	14	0.00046
s__UBA11452 sp003526375	5409	S	31	4	35	0.00116
s__Akkermansia muciniphila_B	5401	S	35	5	40	0.00132
s__UBA7185 sp002491065	5995	S	13	0	13	0.00043
s__Fusobacterium_A varium	3415	S	11	0	11	0.00036
s__Fusobacterium_A mortiferum	3417	S	10	1	11	0.00036
Homo sapiens	128919	S	24	0	24	0.00079
s__Methanobrevibacter_A sp900766745	4086	S	17	0	17	0.00056