name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
s__Prevotella sp000434975	1689	S	215	69	284	0.06562
s__Prevotella sp900557255	1732	S	175	111	286	0.06608
s__Prevotella stercorea	1688	S	18	4	22	0.00508
s__Prevotella sp002350355	1778	S	11	3	14	0.00323
s__Bacteroides uniformis	1658	S	103	216	319	0.07371
s__Bacteroides cellulosilyticus	1786	S	97	43	140	0.03235
s__Bacteroides fragilis	1776	S	68	39	107	0.02472
s__Bacteroides thetaiotaomicron	1794	S	64	57	121	0.02796
s__Bacteroides stercoris	1651	S	48	27	75	0.01733
s__Bacteroides ovatus	1679	S	17	42	59	0.01363
s__Bacteroides xylanisolvens	1680	S	12	29	41	0.00947
s__Phocaeicola dorei	1673	S	132	589	721	0.16659
s__Phocaeicola plebeius_A	1668	S	11	16	27	0.00624
s__Alistipes putredinis	1656	S	24	51	75	0.01733
s__Alistipes shahii	1644	S	17	57	74	0.01710
s__Alistipes onderdonkii	1678	S	12	21	33	0.00762
s__Tidjanibacter inops_A	1785	S	26	3	29	0.00670
s__Parabacteroides distasonis	1652	S	17	5	22	0.00508
s__Parabacteroides merdae	1660	S	10	14	24	0.00555
s__Parabacteroides goldsteinii	1811	S	10	1	11	0.00254
s__Barnesiella intestinihominis	1653	S	36	5	41	0.00947
s__Escherichia coli_D	3231	S	332	117	449	0.10374
s__Citrobacter freundii	3258	S	51	5	56	0.01294
s__Citrobacter braakii	3259	S	37	1	38	0.00878
s__Citrobacter portucalensis	3262	S	20	1	21	0.00485
s__Klebsiella pneumoniae	3228	S	66	54	120	0.02773
s__Klebsiella_A michiganensis	3246	S	21	2	23	0.00531
s__Klebsiella_A grimontii	3244	S	13	2	15	0.00347
s__Pseudomonas_E carnis	4881	S	41	10	51	0.01178
s__Pseudomonas_E extremaustralis	4888	S	17	2	19	0.00439
s__Pseudomonas_E fulva	6022	S	15	3	18	0.00416
s__Pseudomonas aeruginosa	4882	S	28	6	34	0.00786
s__Acinetobacter guillouiae	6018	S	12	2	14	0.00323
s__Comamonas kerstersii	2190	S	26	0	26	0.00601
s__Sutterella wadsworthensis_A	2132	S	10	12	22	0.00508
s__Achromobacter xylosoxidans	2186	S	13	1	14	0.00323
s__Sphingomonas yabuuchiae	6085	S	56	0	56	0.01294
s__Unknown_4715	6086	S	29	0	29	0.00670
s__Bradyrhizobium sp000015165	5075	S	20	4	24	0.00555
s__Bradyrhizobium sp003020075	5077	S	11	2	13	0.00300
s__Microvirga massiliensis	5076	S	28	0	28	0.00647
s__Unknown_4820	6160	S	33	0	33	0.00762
s__Faecalibacterium prausnitzii_E	4255	S	13	18	31	0.00716
s__Faecalibacterium prausnitzii_G	4303	S	10	34	44	0.01017
s__ER4 sp000765235	4272	S	14	34	48	0.01109
s__CAG-177 sp003514385	4206	S	16	5	21	0.00485
s__Acetatifactor sp900066565	3553	S	11	31	42	0.00970
s__Ruminococcus_B gnavus	3719	S	13	27	40	0.00924
s__Eisenbergiella sp900066775	3520	S	11	11	22	0.00508
s__Anaerotignum faecicola	3527	S	11	5	16	0.00370
s__UBA11524 sp000437595	2251	S	19	5	24	0.00555
s__Cutibacterium acnes	4876	S	109	14	123	0.02842
s__Aeromicrobium massiliense	6013	S	11	0	11	0.00254
s__Blastococcus massiliensis	5861	S	81	1	82	0.01895
s__Micrococcus luteus	5443	S	10	4	14	0.00323
s__Mobilicoccus massiliensis	5449	S	19	0	19	0.00439
s__Phascolarctobacterium faecium	1515	S	12	2	14	0.00323
s__Megamonas funiformis	5089	S	14	2	16	0.00370
s__Bilophila wadsworthia	3183	S	47	7	54	0.01248
Homo sapiens	128919	S	55	0	55	0.01271