name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
s__Bacteroides cellulosilyticus	1786	S	57028	19848	76876	0.15141
s__Bacteroides uniformis	1658	S	44437	81592	126029	0.24822
s__Bacteroides ovatus	1679	S	9436	18331	27767	0.05469
s__Bacteroides salyersiae	1792	S	8487	975	9462	0.01864
s__Bacteroides fragilis	1776	S	4088	1789	5877	0.01158
s__Bacteroides thetaiotaomicron	1794	S	3648	2502	6150	0.01211
s__Bacteroides sp900552405	1789	S	657	199	856	0.00169
s__Bacteroides nordii	1729	S	602	60	662	0.00130
s__Bacteroides xylanisolvens	1680	S	270	516	786	0.00155
s__Bacteroides sp900556215	1787	S	201	47	248	0.00049
s__Bacteroides stercoris	1651	S	152	73	225	0.00044
s__Bacteroides caccae	1799	S	124	99	223	0.00044
s__Bacteroides intestinalis	1788	S	78	25	103	0.00020
s__Bacteroides sp902362375	1681	S	69	18	87	0.00017
s__Bacteroides eggerthii	1806	S	60	26	86	0.00017
s__Bacteroides fragilis_A	1793	S	29	3	32	0.00006
s__Bacteroides faecis	1795	S	21	5	26	0.00005
s__Bacteroides sp900066265	2037	S	16	3	19	0.00004
s__Bacteroides clarus	1914	S	13	1	14	0.00003
s__Bacteroides finegoldii	2036	S	11	6	17	0.00003
s__Phocaeicola dorei	1673	S	13716	50246	63962	0.12598
s__Phocaeicola plebeius_A	1668	S	510	655	1165	0.00229
s__Phocaeicola coprocola	1676	S	146	63	209	0.00041
s__Phocaeicola massiliensis	1853	S	140	114	254	0.00050
s__Phocaeicola ilei	5506	S	127	7	134	0.00026
s__Phocaeicola coprophilus	1756	S	82	11	93	0.00018
s__Phocaeicola plebeius	1669	S	57	58	115	0.00023
s__Phocaeicola sp000434735	1767	S	24	0	24	0.00005
s__Prevotella sp900557255	1732	S	486	238	724	0.00143
s__Prevotella hominis	1852	S	185	57	242	0.00048
s__Prevotella copri_A	1770	S	184	84	268	0.00053
s__Prevotella oris	2123	S	47	2	49	0.00010
s__Prevotella sp000436915	1838	S	40	6	46	0.00009
s__Prevotella sp003447235	1723	S	34	3	37	0.00007
s__Prevotella sp900313215	1797	S	26	6	32	0.00006
s__Prevotella stercorea	1688	S	23	4	27	0.00005
s__Prevotella sp000434975	1689	S	22	5	27	0.00005
s__Prevotella rara	1737	S	16	1	17	0.00003
s__Prevotella sp900546535	1771	S	14	8	22	0.00004
s__Prevotella sp002265625	1796	S	12	1	13	0.00003
s__Unknown_0434	1701	S	10	0	10	0.00002
s__Prevotellamassilia sp900540885	1766	S	48	2	50	0.00010
s__Prevotellamassilia timonensis	1720	S	13	0	13	0.00003
s__Prevotellamassilia sp900539625	1719	S	11	0	11	0.00002
s__Paraprevotella clara	1654	S	58	9	67	0.00013
s__UBA4372 sp900543815	1791	S	12	0	12	0.00002
s__Alistipes putredinis	1656	S	15168	23685	38853	0.07652
s__Alistipes finegoldii	1757	S	6431	5300	11731	0.02310
s__Alistipes shahii	1644	S	5387	12654	18041	0.03553
s__Alistipes onderdonkii	1678	S	367	537	904	0.00178
s__Alistipes communis	1721	S	61	42	103	0.00020
s__Alistipes sp000434235	1760	S	23	2	25	0.00005
s__Tidjanibacter inops_A	1785	S	42	4	46	0.00009
s__Alistipes_A sp900240235	1759	S	13	1	14	0.00003
s__Alistipes_A indistinctus	1657	S	10	2	12	0.00002
s__Parabacteroides distasonis	1652	S	8032	1677	9709	0.01912
s__Parabacteroides merdae	1660	S	4264	3985	8249	0.01625
s__Parabacteroides johnsonii	1661	S	22	3	25	0.00005
s__Parabacteroides sp000436495	1804	S	19	1	20	0.00004
s__Parabacteroides goldsteinii	1811	S	10	0	10	0.00002
s__Barnesiella intestinihominis	1653	S	8720	1152	9872	0.01944
s__Odoribacter splanchnicus	1675	S	7370	2835	10205	0.02010
s__Butyricimonas virosa	1733	S	15	0	15	0.00003
s__CAG-279 sp000437795	1722	S	94	8	102	0.00020
s__CAG-279 sp900544305	1924	S	19	0	19	0.00004
s__RC9 sp000433355	1738	S	23	11	34	0.00007
s__RC9 sp000435075	1765	S	21	0	21	0.00004
s__RC9 sp000434935	1841	S	10	0	10	0.00002
s__Coprobacter fastidiosus	1735	S	25	3	28	0.00006
s__Faecalibacterium prausnitzii_D	4326	S	1587	2146	3733	0.00735
s__Faecalibacterium prausnitzii_G	4303	S	1560	928	2488	0.00490
s__Faecalibacterium prausnitzii_C	4177	S	1514	839	2353	0.00463
s__Faecalibacterium prausnitzii_F	4419	S	958	243	1201	0.00237
s__Faecalibacterium prausnitzii	4190	S	94	96	190	0.00037
s__Faecalibacterium prausnitzii_E	4255	S	45	11	56	0.00011
s__Faecalibacterium sp900539945	4362	S	11	8	19	0.00004
s__Faecalibacterium prausnitzii_H	4357	S	10	1	11	0.00002
s__Ruminococcus_D bicirculans	4247	S	1780	273	2053	0.00404
s__Ruthenibacterium lactatiformans	4205	S	117	34	151	0.00030
s__Ruthenibacterium sp900546885	4379	S	26	1	27	0.00005
s__UMGS966 sp900547185	4722	S	123	3	126	0.00025
s__Gemmiger qucibialis	4176	S	56	26	82	0.00016
s__Gemmiger formicilis	4252	S	31	18	49	0.00010
s__Flavonifractor plautii	4250	S	2752	1311	4063	0.00800
s__Flavonifractor sp900549795	4602	S	10	1	11	0.00002
s__Dysosmobacter welbionis	4178	S	2042	1438	3480	0.00685
s__Unknown_3154	4546	S	329	47	376	0.00074
s__Dysosmobacter sp001916835	4342	S	25	11	36	0.00007
s__Lawsonibacter asaccharolyticus	4500	S	382	82	464	0.00091
s__Lawsonibacter sp900545895	4411	S	371	12	383	0.00075
s__Lawsonibacter sp014287875	4472	S	333	49	382	0.00075
s__Lawsonibacter sp000177015	4698	S	30	3	33	0.00006
s__Lawsonibacter sp900066825	4231	S	20	8	28	0.00006
s__Lawsonibacter sp900549405	4471	S	20	1	21	0.00004
s__Lawsonibacter sp902363045	4233	S	11	3	14	0.00003
s__Lawsonibacter sp900066645	4653	S	10	0	10	0.00002
s__Unknown_4528	4750	S	119	33	152	0.00030
s__ER4 sp000765235	4272	S	62	49	111	0.00022
s__Evtepia sp900546255	4459	S	67	4	71	0.00014
s__CAG-110 sp900547405	4611	S	17	0	17	0.00003
s__CAG-110 sp000434635	4306	S	14	4	18	0.00004
s__CAG-83 sp000435555	4348	S	11	6	17	0.00003
s__HGM13006 sp900757695	4249	S	12	0	12	0.00002
s__UBA1777 sp003150355	4319	S	10	0	10	0.00002
s__Eubacterium_R sp000431535	4380	S	1550	63	1613	0.00318
s__Eubacterium_R sp000436835	4258	S	971	164	1135	0.00224
s__Eubacterium_R sp900539425	4442	S	45	2	47	0.00009
s__Eubacterium_R sp900539845	4523	S	42	1	43	0.00008
s__Ruminococcus_E sp003526955	4209	S	120	42	162	0.00032
s__Ruminococcus_E bromii_B	4211	S	53	15	68	0.00013
s__Pseudoruminococcus massiliensis	4371	S	96	11	107	0.00021
s__UMGS1071 sp900542375	4224	S	79	8	87	0.00017
s__CAG-180 sp000432435	4187	S	56	11	67	0.00013
s__Anaeromassilibacillus sp002159845	4703	S	31	1	32	0.00006
s__UBA1417 sp900549945	4275	S	14	0	14	0.00003
s__UBA1417 sp003531055	4188	S	10	1	11	0.00002
s__Acutalibacter sp900755895	4700	S	12	0	12	0.00002
s__UBA737 sp900549055	4390	S	15	1	16	0.00003
s__CAG-177 sp003514385	4206	S	12	0	12	0.00002
s__Butyricicoccus pullicaecorum	4463	S	139	4	143	0.00028
s__Butyricicoccus sp900547195	4745	S	49	0	49	0.00010
s__Agathobaculum sp900291975	4302	S	43	2	45	0.00009
s__Agathobaculum butyriciproducens	4229	S	20	3	23	0.00005
s__Lachnospira rogosae_A	3539	S	2260	1266	3526	0.00694
s__Lachnospira sp000436535	3691	S	1658	291	1949	0.00384
s__Lachnospira eligens_A	3513	S	706	642	1348	0.00265
s__Lachnospira sp900316325	3510	S	46	11	57	0.00011
s__Lachnospira sp000437735	3607	S	34	7	41	0.00008
s__Lachnospira sp900551945	3828	S	31	2	33	0.00006
s__Eubacterium_G sp000434315	3519	S	2235	362	2597	0.00511
s__Eubacterium_G ventriosum	3566	S	622	148	770	0.00152
s__Agathobacter faecis	3574	S	645	634	1279	0.00252
s__Agathobacter rectalis	3541	S	102	57	159	0.00031
s__Mediterraneibacter torques	3521	S	539	392	931	0.00183
s__Mediterraneibacter faecis	3698	S	114	53	167	0.00033
s__Roseburia inulinivorans	3591	S	337	346	683	0.00135
s__Roseburia hominis	3528	S	168	53	221	0.00044
s__Roseburia intestinalis	3681	S	38	54	92	0.00018
s__Anaerostipes hadrus	3523	S	453	232	685	0.00135
s__Enterocloster sp900541315	3544	S	136	37	173	0.00034
s__Enterocloster lavalensis	3878	S	106	1	107	0.00021
s__Enterocloster bolteae	3643	S	81	14	95	0.00019
s__Enterocloster citroniae	3872	S	51	2	53	0.00010
s__Enterocloster aldenensis	3803	S	39	4	43	0.00008
s__Enterocloster sp001517625	3576	S	21	7	28	0.00006
s__Enterocloster sp000431375	3543	S	14	7	21	0.00004
s__CAG-81 sp000435795	3605	S	383	31	414	0.00082
s__UBA3402 sp003478355	3820	S	342	29	371	0.00073
s__Unknown_2258	3784	S	236	7	243	0.00048
s__Clostridium_Q saccharolyticum_A	3783	S	43	2	45	0.00009
s__Clostridium_Q symbiosum	3663	S	22	1	23	0.00005
s__Clostridium_Q sp003024715	3569	S	14	5	19	0.00004
s__Blautia_A wexlerae_A	3683	S	198	316	514	0.00101
s__Blautia_A massiliensis	3629	S	26	12	38	0.00007
s__Blautia_A sp900066145	3788	S	17	2	19	0.00004
s__Blautia_A faecis	3705	S	11	4	15	0.00003
s__Faecalimonas phoceensis	3725	S	153	48	201	0.00040
s__Unknown_4305	3836	S	25	0	25	0.00005
s__AM51-8 sp003478275	3526	S	107	15	122	0.00024
s__Hungatella effluvii	3799	S	104	3	107	0.00021
s__Fusicatenibacter saccharivorans	3517	S	98	100	198	0.00039
s__Acetatifactor sp900066565	3553	S	74	69	143	0.00028
s__Acetatifactor sp900066365	3552	S	12	9	21	0.00004
s__UMGS1375 sp900066615	3529	S	74	23	97	0.00019
s__UC5-1-2E3 sp001304875	3922	S	61	1	62	0.00012
s__UBA7182 sp003480725	3874	S	53	7	60	0.00012
s__Eisenbergiella sp900066775	3520	S	45	12	57	0.00011
s__UBA9502 sp900540335	3781	S	30	2	32	0.00006
s__Sellimonas intestinalis	3650	S	29	1	30	0.00006
s__Eubacterium_F sp003491505	3568	S	24	3	27	0.00005
s__Ruminococcus_B gnavus	3719	S	29	21	50	0.00010
s__Unknown_2207	3726	S	25	1	26	0.00005
s__Clostridium_AP scindens	3649	S	23	0	23	0.00005
s__KLE1615 sp900066985	3532	S	20	2	22	0.00004
s__TF01-11 sp003529475	3614	S	14	1	15	0.00003
s__RUG115 sp900066395	3624	S	19	3	22	0.00004
s__Butyrivibrio_A crossotus	3742	S	12	1	13	0.00003
s__Anaerobutyricum hallii	3548	S	13	5	18	0.00004
s__Muricomes contortus_B	3732	S	10	0	10	0.00002
s__CAG-127 sp900319515	3533	S	10	4	14	0.00003
s__Anaerotignum faecicola	3527	S	403	72	475	0.00094
s__Unknown_2445	3952	S	104	0	104	0.00020
s__CAG-274 sp000432155	3571	S	102	18	120	0.00024
s__Intestinibacter bartlettii	4812	S	424	22	446	0.00088
s__Intestinibacter sp900540355	4842	S	12	0	12	0.00002
s__Romboutsia timonensis	4830	S	14	2	16	0.00003
s__Clostridioides difficile	4836	S	11	0	11	0.00002
s__CAG-145 sp900540145	4844	S	46	3	49	0.00010
s__UBA1191 sp900549125	4811	S	13	0	13	0.00003
s__CAG-245 sp000435175	5121	S	145	41	186	0.00037
s__CAG-269 sp000431335	5140	S	11	3	14	0.00003
s__CAG-465 sp000433755	5180	S	53	2	55	0.00011
s__CAG-41 sp900066215	4109	S	181	53	234	0.00046
s__SFFH01 sp900542445	2250	S	50	9	59	0.00012
s__UBA11524 sp000437595	2251	S	15	1	16	0.00003
s__HGM11372 sp900767715	2409	S	74	0	74	0.00015
s__Megamonas funiformis	5089	S	8415	791	9206	0.01813
s__Phascolarctobacterium faecium	1515	S	4808	804	5612	0.01105
s__Phascolarctobacterium_A succinatutens	1517	S	11	5	16	0.00003
s__Veillonella dispar_A	5346	S	68	55	123	0.00024
s__Veillonella rogosae	5347	S	53	8	61	0.00012
s__Veillonella parvula_A	5327	S	44	12	56	0.00011
s__Anaeroglobus micronuciformis	5360	S	46	1	47	0.00009
s__Duodenibacillus sp900538905	2130	S	6423	888	7311	0.01440
s__Duodenibacillus sp003472385	2131	S	57	11	68	0.00013
s__Parasutterella excrementihominis	2152	S	306	413	719	0.00142
s__Escherichia coli_D	3231	S	623	91	714	0.00141
s__Haemophilus_D parainfluenzae_K	3213	S	45	91	136	0.00027
s__Haemophilus_D sp900755445	3217	S	11	15	26	0.00005
s__Faecalibacillus intestinalis	3362	S	1819	1169	2988	0.00589
s__Faecalibacillus faecis	3363	S	30	6	36	0.00007
s__Catenibacterium sp000437715	3349	S	651	61	712	0.00140
s__Catenibacterium mitsuokai	3350	S	10	1	11	0.00002
s__Erysipelatoclostridium ramosum	3368	S	111	52	163	0.00032
s__Erysipelatoclostridium spiroforme	3372	S	60	7	67	0.00013
s__Massiliomicrobiota sp002160865	3370	S	16	6	22	0.00004
s__Holdemania filiformis	3396	S	45	1	46	0.00009
s__Holdemania massiliensis	3367	S	13	0	13	0.00003
s__Holdemanella sp002299315	3356	S	15	5	20	0.00004
s__Amedibacterium intestinale	3376	S	20	1	21	0.00004
s__Unknown_1924	3391	S	17	0	17	0.00003
s__CAG-302 sp001916775	4938	S	786	145	931	0.00183
s__CAG-628 sp003524085	4978	S	74	2	76	0.00015
s__Streptococcus parasanguinis_B	3985	S	42	18	60	0.00012
s__Streptococcus salivarius	3957	S	21	11	32	0.00006
s__Streptococcus koreensis	4021	S	16	7	23	0.00005
s__Streptococcus sp000411475	4067	S	10	0	10	0.00002
s__Lactococcus lactis	4001	S	15	0	15	0.00003
s__Granulicatella sp001058355	4078	S	13	0	13	0.00003
s__Turicibacter sp001543345	3506	S	111	7	118	0.00023
s__CAG-313 sp003539625	4099	S	13	2	15	0.00003
s__Desulfovibrio desulfuricans	3199	S	454	4	458	0.00090
s__Bilophila wadsworthia	3183	S	22	3	25	0.00005
s__Bifidobacterium infantis	1566	S	50	77	127	0.00025
s__Bifidobacterium pseudocatenulatum	1585	S	26	19	45	0.00009
s__Bifidobacterium adolescentis	1567	S	21	20	41	0.00008
s__Collinsella aerofaciens_H	2991	S	11	41	52	0.00010
s__CAG-1427 sp000435475	3131	S	18	0	18	0.00004
s__Eggerthella lenta	3086	S	11	1	12	0.00002
Homo sapiens	128919	S	139	0	139	0.00027