name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
s__Bacteroides ovatus	1679	S	15538	36992	52530	0.13335
s__Bacteroides uniformis	1658	S	4297	7112	11409	0.02896
s__Bacteroides caccae	1799	S	1050	903	1953	0.00496
s__Bacteroides xylanisolvens	1680	S	899	2227	3126	0.00794
s__Bacteroides finegoldii	2036	S	748	560	1308	0.00332
s__Bacteroides fragilis	1776	S	515	270	785	0.00199
s__Bacteroides cellulosilyticus	1786	S	357	176	533	0.00135
s__Bacteroides salyersiae	1792	S	332	36	368	0.00093
s__Bacteroides thetaiotaomicron	1794	S	251	203	454	0.00115
s__Bacteroides stercoris	1651	S	97	47	144	0.00037
s__Bacteroides eggerthii	1806	S	83	39	122	0.00031
s__Bacteroides clarus	1914	S	78	10	88	0.00022
s__Bacteroides sp900066265	2037	S	55	18	73	0.00019
s__Bacteroides nordii	1729	S	40	4	44	0.00011
s__Bacteroides intestinalis	1788	S	21	9	30	0.00008
s__Bacteroides sp902362375	1681	S	18	6	24	0.00006
s__Bacteroides faecis	1795	S	18	5	23	0.00006
s__Bacteroides fragilis_A	1793	S	16	2	18	0.00005
s__Bacteroides sp900556215	1787	S	11	4	15	0.00004
s__Phocaeicola dorei	1673	S	25415	72989	98404	0.24980
s__Phocaeicola plebeius_A	1668	S	361	369	730	0.00185
s__Phocaeicola coprocola	1676	S	267	93	360	0.00091
s__Phocaeicola plebeius	1669	S	162	133	295	0.00075
s__Phocaeicola massiliensis	1853	S	143	92	235	0.00060
s__Phocaeicola coprophilus	1756	S	85	9	94	0.00024
s__Phocaeicola sp000432735	1886	S	17	1	18	0.00005
s__Phocaeicola sp900542985	1911	S	11	0	11	0.00003
s__Prevotella sp900313215	1797	S	203	41	244	0.00062
s__Prevotella sp900557255	1732	S	165	66	231	0.00059
s__Prevotella timonensis	1913	S	65	3	68	0.00017
s__Prevotella stercorea	1688	S	44	6	50	0.00013
s__Prevotella copri_A	1770	S	30	11	41	0.00010
s__Prevotella hominis	1852	S	28	6	34	0.00009
s__Prevotella sp002265625	1796	S	22	1	23	0.00006
s__Prevotella sp000434975	1689	S	12	2	14	0.00004
s__Unknown_0386	1697	S	11	0	11	0.00003
s__Paraprevotella clara	1654	S	72	13	85	0.00022
s__Prevotellamassilia sp900540885	1766	S	28	0	28	0.00007
s__Prevotellamassilia sp900539625	1719	S	16	0	16	0.00004
s__UBA6398 sp003150315	1769	S	10	0	10	0.00003
s__Parabacteroides merdae	1660	S	16365	13524	29889	0.07587
s__Parabacteroides distasonis	1652	S	3443	635	4078	0.01035
s__Parabacteroides goldsteinii	1811	S	623	36	659	0.00167
s__Parabacteroides johnsonii	1661	S	19	2	21	0.00005
s__Parabacteroides sp000436495	1804	S	15	0	15	0.00004
s__Alistipes shahii	1644	S	3070	5341	8411	0.02135
s__Alistipes onderdonkii	1678	S	1569	1740	3309	0.00840
s__Alistipes putredinis	1656	S	636	809	1445	0.00367
s__Alistipes communis	1721	S	61	31	92	0.00023
s__Alistipes finegoldii	1757	S	57	34	91	0.00023
s__Alistipes sp000434235	1760	S	31	2	33	0.00008
s__Tidjanibacter inops_A	1785	S	560	47	607	0.00154
s__Alistipes_A sp900240235	1759	S	32	3	35	0.00009
s__Alistipes_A indistinctus	1657	S	10	1	11	0.00003
s__Barnesiella intestinihominis	1653	S	394	47	441	0.00112
s__Odoribacter splanchnicus	1675	S	144	48	192	0.00049
s__Butyricimonas virosa	1733	S	17	0	17	0.00004
s__CAG-279 sp000437795	1722	S	67	4	71	0.00018
s__RC9 sp000435075	1765	S	43	1	44	0.00011
s__RC9 sp000433355	1738	S	17	11	28	0.00007
s__Coprobacter fastidiosus	1735	S	19	2	21	0.00005
s__Faecalibacterium sp900539945	4362	S	20178	15182	35360	0.08976
s__Faecalibacterium prausnitzii_G	4303	S	7276	4156	11432	0.02902
s__Faecalibacterium prausnitzii_D	4326	S	2448	3144	5592	0.01420
s__Faecalibacterium prausnitzii_C	4177	S	965	516	1481	0.00376
s__Faecalibacterium prausnitzii	4190	S	624	612	1236	0.00314
s__Faecalibacterium prausnitzii_E	4255	S	179	46	225	0.00057
s__Faecalibacterium prausnitzii_J	4191	S	33	47	80	0.00020
s__Faecalibacterium prausnitzii_H	4357	S	29	4	33	0.00008
s__Faecalibacterium prausnitzii_I	4344	S	12	2	14	0.00004
s__Gemmiger qucibialis	4176	S	12987	5287	18274	0.04639
s__Gemmiger sp900539695	4257	S	261	74	335	0.00085
s__Gemmiger formicilis	4252	S	186	88	274	0.00070
s__Gemmiger sp900540595	4276	S	56	8	64	0.00016
s__Gemmiger sp900554145	4404	S	19	1	20	0.00005
s__CAG-115 sp003531585	4329	S	1599	216	1815	0.00461
s__Ruthenibacterium lactatiformans	4205	S	642	162	804	0.00204
s__Ruthenibacterium sp900759375	4724	S	10	0	10	0.00003
s__Ruminococcus_D bicirculans	4247	S	260	46	306	0.00078
s__UMGS966 sp900547185	4722	S	122	3	125	0.00032
s__Pygmaiobacter sp014287275	5956	S	119	0	119	0.00030
s__Ruminococcus_C callidus	4259	S	73	15	88	0.00022
s__Negativibacillus massiliensis	4251	S	61	2	63	0.00016
s__Anaerotruncus rubiinfantis	4655	S	52	2	54	0.00014
s__Anaerotruncus colihominis	4656	S	12	0	12	0.00003
s__Ruminiclostridium_E siraeum	4182	S	40	9	49	0.00012
s__Angelakisella sp900547385	4267	S	16	1	17	0.00004
s__UBA3818 sp900557155	4741	S	12	1	13	0.00003
s__CAG-353 sp900066885	4412	S	11	1	12	0.00003
s__Flavonifractor plautii	4250	S	3721	1849	5570	0.01414
s__Flavonifractor sp900549795	4602	S	24	2	26	0.00007
s__ER4 sp000765235	4272	S	1679	986	2665	0.00677
s__ER4 sp900317525	4227	S	314	128	442	0.00112
s__ER4 sp900550165	4273	S	197	28	225	0.00057
s__Dysosmobacter welbionis	4178	S	705	563	1268	0.00322
s__Dysosmobacter sp001916835	4342	S	617	290	907	0.00230
s__Dysosmobacter sp900542115	4361	S	374	52	426	0.00108
s__Unknown_3154	4546	S	311	46	357	0.00091
s__Dysosmobacter sp014297375	4720	S	50	6	56	0.00014
s__Unknown_3004	4542	S	12	0	12	0.00003
s__CAG-170 sp900549635	4502	S	431	60	491	0.00125
s__CAG-170 sp900553545	4576	S	247	30	277	0.00070
s__CAG-170 sp002404795	4436	S	231	79	310	0.00079
s__CAG-170 sp003516765	4354	S	204	54	258	0.00065
s__CAG-170 sp000432135	4337	S	159	82	241	0.00061
s__CAG-170 sp900545925	4338	S	32	20	52	0.00013
s__CAG-83 sp000431575	4230	S	161	41	202	0.00051
s__CAG-83 sp900545585	4318	S	81	15	96	0.00024
s__CAG-83 sp000435555	4348	S	51	19	70	0.00018
s__Lawsonibacter sp014287875	4472	S	91	13	104	0.00026
s__Lawsonibacter sp900066645	4653	S	63	5	68	0.00017
s__Lawsonibacter sp900066825	4231	S	31	14	45	0.00011
s__Lawsonibacter asaccharolyticus	4500	S	27	6	33	0.00008
s__Lawsonibacter sp003478995	5898	S	10	0	10	0.00003
s__Unknown_3158	4746	S	251	28	279	0.00071
s__CAG-110 sp000434635	4306	S	54	16	70	0.00018
s__CAG-110 sp003525905	4228	S	51	11	62	0.00016
s__CAG-103 sp900543625	4238	S	27	4	31	0.00008
s__CAG-103 sp000432375	4237	S	24	17	41	0.00010
s__CAG-103 sp900757655	4239	S	13	4	17	0.00004
s__Evtepia gabavorous	4208	S	53	8	61	0.00015
s__Unknown_4528	4750	S	28	8	36	0.00009
s__An92 sp900199495	4771	S	27	1	28	0.00007
s__Pseudoflavonifractor capillosus	4632	S	23	2	25	0.00006
s__UBA9475 sp900549885	4473	S	17	1	18	0.00005
s__UBA5446 sp900545405	4464	S	11	3	14	0.00004
s__Ruminococcus_E sp003526955	4209	S	4547	2885	7432	0.01887
s__Ruminococcus_E bromii_B	4211	S	1128	790	1918	0.00487
s__Ruminococcus_E sp003438075	4210	S	49	22	71	0.00018
s__Ruminococcus_E bromii	4212	S	30	23	53	0.00013
s__UMGS1071 sp900542375	4224	S	637	84	721	0.00183
s__UBA1417 sp003531055	4188	S	244	33	277	0.00070
s__CAG-180 sp000432435	4187	S	202	36	238	0.00060
s__CAG-177 sp003514385	4206	S	39	4	43	0.00011
s__Anaeromassilibacillus sp002159845	4703	S	30	1	31	0.00008
s__Pseudoruminococcus massiliensis	4371	S	17	2	19	0.00005
s__CAG-217 sp000436335	4179	S	15	0	15	0.00004
s__Clostridium_A leptum	4253	S	10	0	10	0.00003
s__UMGS856 sp900546265	4519	S	10	0	10	0.00003
s__Agathobaculum sp900544475	4246	S	541	70	611	0.00155
s__Agathobaculum butyriciproducens	4229	S	501	103	604	0.00153
s__Agathobaculum sp003481705	4245	S	55	17	72	0.00018
s__Agathobaculum sp900291975	4302	S	52	2	54	0.00014
s__Unknown_4498	5871	S	27	0	27	0.00007
s__Unknown_4401	5870	S	15	0	15	0.00004
s__Butyricicoccus_A sp002395695	4256	S	20	0	20	0.00005
s__Agathobacter faecis	3574	S	6024	6907	12931	0.03282
s__Agathobacter rectalis	3541	S	769	505	1274	0.00323
s__Acetatifactor sp900066565	3553	S	2056	2640	4696	0.01192
s__Acetatifactor sp900066365	3552	S	1180	1401	2581	0.00655
s__Acetatifactor sp003447295	3554	S	24	13	37	0.00009
s__Roseburia hominis	3528	S	2452	905	3357	0.00852
s__Roseburia intestinalis	3681	S	678	1131	1809	0.00459
s__Roseburia inulinivorans	3591	S	98	113	211	0.00054
s__Roseburia sp900542495	3592	S	23	10	33	0.00008
s__Roseburia sp003470905	3680	S	16	12	28	0.00007
s__Lachnospira eligens_A	3513	S	1134	1374	2508	0.00637
s__Lachnospira sp000436535	3691	S	414	102	516	0.00131
s__Lachnospira rogosae_A	3539	S	129	93	222	0.00056
s__Lachnospira sp900316325	3510	S	34	11	45	0.00011
s__Lachnospira sp003537285	3514	S	14	16	30	0.00008
s__Lachnospira sp000436475	3547	S	11	2	13	0.00003
s__Lachnospira sp000437735	3607	S	11	3	14	0.00004
s__Eisenbergiella sp900066775	3520	S	2462	820	3282	0.00833
s__CAG-81 sp900066535	3675	S	1294	1005	2299	0.00584
s__CAG-81 sp900066785	3676	S	23	7	30	0.00008
s__UBA3402 sp003478355	3820	S	1105	101	1206	0.00306
s__UBA7182 sp003480725	3874	S	928	147	1075	0.00273
s__Clostridium_Q sp003024715	3569	S	599	291	890	0.00226
s__Clostridium_Q symbiosum	3663	S	34	3	37	0.00009
s__Clostridium_Q sp000435655	3598	S	16	1	17	0.00004
s__Mediterraneibacter torques	3521	S	480	410	890	0.00226
s__Mediterraneibacter lactaris	3597	S	132	81	213	0.00054
s__Mediterraneibacter faecis	3698	S	30	16	46	0.00012
s__UBA9502 sp003480315	3826	S	231	62	293	0.00074
s__UBA9502 sp900770535	5749	S	226	19	245	0.00062
s__UBA9502 sp003478505	3825	S	25	8	33	0.00008
s__Blautia_A wexlerae_A	3683	S	207	371	578	0.00147
s__Blautia_A faecis	3705	S	93	45	138	0.00035
s__Blautia_A sp003477525	5762	S	63	20	83	0.00021
s__Blautia_A sp900120195	3658	S	37	12	49	0.00012
s__Blautia_A massiliensis	3629	S	26	14	40	0.00010
s__Blautia_A obeum	3697	S	17	11	28	0.00007
s__Blautia_A sp900066145	3788	S	11	1	12	0.00003
s__Eubacterium_F sp003491505	3568	S	502	80	582	0.00148
s__Eubacterium_F sp900539115	3775	S	10	1	11	0.00003
s__Enterocloster sp900541315	3544	S	271	93	364	0.00092
s__Enterocloster sp000431375	3543	S	50	32	82	0.00021
s__Enterocloster asparagiformis	3877	S	35	2	37	0.00009
s__Enterocloster bolteae	3643	S	23	5	28	0.00007
s__Enterocloster lavalensis	3878	S	11	0	11	0.00003
s__Ruminococcus_B gnavus	3719	S	468	395	863	0.00219
s__COE1 sp001916965	3738	S	453	55	508	0.00129
s__Dorea_A longicatena_B	3692	S	139	109	248	0.00063
s__Dorea_A longicatena	3693	S	13	13	26	0.00007
s__Eubacterium_G sp000434315	3519	S	94	14	108	0.00027
s__Eubacterium_G ventriosum	3566	S	62	15	77	0.00020
s__Bariatricus comes	3690	S	157	101	258	0.00065
s__Fusicatenibacter saccharivorans	3517	S	151	182	333	0.00085
s__Anaerostipes hadrus	3523	S	66	31	97	0.00025
s__Dorea formicigenerans	3873	S	63	19	82	0.00021
s__TF01-11 sp003529475	3614	S	26	3	29	0.00007
s__TF01-11 sp003524945	3673	S	16	2	18	0.00005
s__Lachnoclostridium_B sp900066555	3540	S	38	2	40	0.00010
s__RUG115 sp900066395	3624	S	43	8	51	0.00013
s__KLE1615 sp900066985	3532	S	37	5	42	0.00011
s__CAG-127 sp900319515	3533	S	32	15	47	0.00012
s__CAG-882 sp003486385	3617	S	26	2	28	0.00007
s__Mediterraneibacter_A butyricigenes	3879	S	28	5	33	0.00008
s__UMGS1375 sp900066615	3529	S	10	3	13	0.00003
s__UMGS1670 sp900546215	3894	S	231	2	233	0.00059
s__Unknown_4316	5806	S	62	0	62	0.00016
s__Anaerotignum faecicola	3527	S	30	3	33	0.00008
s__Anaerotignum lactatifermentans	3653	S	12	5	17	0.00004
s__CAG-274 sp000432155	3571	S	22	7	29	0.00007
s__CAG-245 sp000435175	5121	S	160	62	222	0.00056
s__CAG-269 sp001916035	5190	S	72	17	89	0.00023
s__CAG-269 sp900556345	5198	S	38	4	42	0.00011
s__CAG-269 sp001916005	5179	S	34	5	39	0.00010
s__CAG-273 sp003534295	5139	S	13	4	17	0.00004
s__Unknown_3237	4825	S	294	5	299	0.00076
s__Romboutsia timonensis	4830	S	45	7	52	0.00013
s__Intestinibacter bartlettii	4812	S	17	0	17	0.00004
s__CAG-41 sp900066215	4109	S	46	18	64	0.00016
s__UBA11524 sp000437595	2251	S	4374	282	4656	0.01182
s__SFFH01 sp900542395	2245	S	112	15	127	0.00032
s__SFFH01 sp900548125	2246	S	28	3	31	0.00008
s__SFEL01 sp004557245	2260	S	14	2	16	0.00004
s__Parasutterella sp000980495	2153	S	2445	2568	5013	0.01273
s__Parasutterella excrementihominis	2152	S	200	296	496	0.00126
s__Sutterella wadsworthensis	2126	S	15	4	19	0.00005
s__Comamonas kerstersii	2190	S	11	0	11	0.00003
s__Escherichia coli_D	3231	S	611	108	719	0.00183
s__Klebsiella pneumoniae	3228	S	14	6	20	0.00005
s__Haemophilus_D sp900755445	3217	S	95	106	201	0.00051
s__Megamonas funiformis	5089	S	3633	310	3943	0.01001
s__Dialister hominis	5305	S	223	27	250	0.00063
s__Dialister sp000434475	5309	S	19	6	25	0.00006
s__Dialister succinatiphilus	5324	S	14	4	18	0.00005
s__Veillonella parvula_A	5327	S	22	6	28	0.00007
s__Veillonella rogosae	5347	S	16	2	18	0.00005
s__Phascolarctobacterium faecium	1515	S	117	16	133	0.00034
s__Phascolarctobacterium_A succinatutens	1517	S	63	7	70	0.00018
s__Streptococcus gallolyticus	3989	S	221	17	238	0.00060
s__Streptococcus thermophilus	3958	S	33	11	44	0.00011
s__Streptococcus salivarius	3957	S	32	9	41	0.00010
s__Streptococcus koreensis	4021	S	20	4	24	0.00006
s__Streptococcus parasanguinis_B	3985	S	11	2	13	0.00003
s__Streptococcus sp000411475	4067	S	10	0	10	0.00003
s__Weissella confusa	4014	S	18	0	18	0.00005
s__Weissella cibaria	3988	S	12	0	12	0.00003
s__Limosilactobacillus vaginalis	3997	S	21	0	21	0.00005
s__Faecalibacillus faecis	3363	S	148	55	203	0.00052
s__Faecalibacillus intestinalis	3362	S	62	42	104	0.00026
s__Catenibacterium sp000437715	3349	S	29	3	32	0.00008
s__Erysipelatoclostridium ramosum	3368	S	14	4	18	0.00005
s__Holdemania filiformis	3396	S	66	0	66	0.00017
s__Holdemania massiliensis	3367	S	18	0	18	0.00005
s__Holdemanella sp002299315	3356	S	16	5	21	0.00005
s__Clostridium_AQ innocuum	3354	S	12	1	13	0.00003
s__CAG-302 sp001916775	4938	S	41	6	47	0.00012
s__Unknown_3449	5051	S	34	6	40	0.00010
s__Bilophila wadsworthia	3183	S	576	62	638	0.00162
s__Desulfovibrio desulfuricans_A	3197	S	38	13	51	0.00013
s__Unknown_1732	3191	S	15	4	19	0.00005
s__QAKL01 sp003343815	4808	S	267	1	268	0.00068
s__Bifidobacterium infantis	1566	S	23	53	76	0.00019
s__Eggerthella lenta	3086	S	27	3	30	0.00008
s__Akkermansia muciniphila	5395	S	58	9	67	0.00017
s__Victivallis sp002998355	5408	S	10	0	10	0.00003
s__Zag111 sp002102825	3476	S	22	0	22	0.00006
Drivevirus gastrointestinalis	2955765	S	177	0	177	0.00045
Homo sapiens	128919	S	49	0	49	0.00012