name	taxonomy_id	taxonomy_lvl	kraken_assigned_reads	added_reads	new_est_reads	fraction_total_reads
s__Prevotella hominis	1852	S	7710	2079	9789	0.11469
s__Prevotella sp900557255	1732	S	2289	1335	3624	0.04246
s__Prevotella sp900313215	1797	S	833	243	1076	0.01261
s__Prevotella copri_A	1770	S	472	256	728	0.00853
s__Prevotella sp002265625	1796	S	346	43	389	0.00456
s__Prevotella sp000434975	1689	S	90	26	116	0.00136
s__Prevotella stercorea	1688	S	79	17	96	0.00112
s__Prevotella sp000436035	1855	S	73	13	86	0.00101
s__Prevotella sp000436595	1892	S	55	3	58	0.00068
s__Prevotella rara	1737	S	55	4	59	0.00069
s__Prevotella sp900546535	1771	S	20	14	34	0.00040
s__Prevotella sp900290275	1798	S	13	1	14	0.00016
s__Prevotella sp900543975	1784	S	11	0	11	0.00013
s__Prevotella sp003447235	1723	S	10	1	11	0.00013
s__Bacteroides caccae	1799	S	2310	2322	4632	0.05427
s__Bacteroides uniformis	1658	S	1475	3106	4581	0.05367
s__Bacteroides ovatus	1679	S	1147	2939	4086	0.04787
s__Bacteroides stercoris	1651	S	1088	634	1722	0.02017
s__Bacteroides thetaiotaomicron	1794	S	521	467	988	0.01158
s__Bacteroides fragilis	1776	S	365	209	574	0.00672
s__Bacteroides xylanisolvens	1680	S	330	851	1181	0.01384
s__Bacteroides cellulosilyticus	1786	S	324	158	482	0.00565
s__Bacteroides finegoldii	2036	S	294	229	523	0.00613
s__Bacteroides clarus	1914	S	264	40	304	0.00356
s__Bacteroides intestinalis	1788	S	245	113	358	0.00419
s__Unknown_0438	1683	S	28	2	30	0.00035
s__Bacteroides nordii	1729	S	27	3	30	0.00035
s__Bacteroides sp900552405	1789	S	14	6	20	0.00023
s__Bacteroides eggerthii	1806	S	12	6	18	0.00021
s__Bacteroides salyersiae	1792	S	12	1	13	0.00015
s__Phocaeicola dorei	1673	S	2729	11151	13880	0.16262
s__Phocaeicola coprocola	1676	S	595	289	884	0.01036
s__Phocaeicola plebeius_A	1668	S	388	547	935	0.01095
s__Phocaeicola plebeius	1669	S	359	406	765	0.00896
s__Phocaeicola sp000434735	1767	S	187	4	191	0.00224
s__Phocaeicola sp900542985	1911	S	114	7	121	0.00142
s__Phocaeicola coprophilus	1756	S	93	14	107	0.00125
s__Phocaeicola sp900066445	1974	S	55	2	57	0.00067
s__Phocaeicola sp900544075	1758	S	30	1	31	0.00036
s__Phocaeicola massiliensis	1853	S	20	18	38	0.00045
s__Prevotellamassilia sp900539625	1719	S	157	7	164	0.00192
s__Prevotellamassilia timonensis	1720	S	135	10	145	0.00170
s__UBA4372 sp900543815	1791	S	201	2	203	0.00238
s__Paraprevotella clara	1654	S	80	27	107	0.00125
s__Paraprevotella xylaniphila	1655	S	13	10	23	0.00027
s__CAG-462 sp003489705	2048	S	12	3	15	0.00018
s__UBA6398 sp003150315	1769	S	23	1	24	0.00028
s__Parabacteroides distasonis	1652	S	1080	266	1346	0.01577
s__Parabacteroides merdae	1660	S	908	1002	1910	0.02238
s__Parabacteroides sp000436495	1804	S	128	10	138	0.00162
s__Parabacteroides goldsteinii	1811	S	56	4	60	0.00070
s__Parabacteroides sp003480915	2013	S	14	0	14	0.00016
s__Parabacteroides sp900549585	1844	S	10	0	10	0.00012
s__Alistipes putredinis	1656	S	430	811	1241	0.01454
s__Alistipes shahii	1644	S	385	1099	1484	0.01739
s__Alistipes onderdonkii	1678	S	103	186	289	0.00339
s__Alistipes communis	1721	S	64	54	118	0.00138
s__Alistipes senegalensis	1883	S	47	11	58	0.00068
s__Alistipes finegoldii	1757	S	41	41	82	0.00096
s__Alistipes_A sp900539755	1677	S	69	2	71	0.00083
s__Alistipes_A sp900240235	1759	S	65	5	70	0.00082
s__Alistipes_A ihumii	1646	S	30	4	34	0.00040
s__RC9 sp000433355	1738	S	238	331	569	0.00667
s__RC9 sp000431015	1739	S	48	36	84	0.00098
s__RC9 sp000432515	1875	S	12	0	12	0.00014
s__RC9 sp900541925	1851	S	11	0	11	0.00013
s__CAG-279 sp000437795	1722	S	373	39	412	0.00483
s__Butyricimonas virosa	1733	S	67	15	82	0.00096
s__Butyricimonas faecihominis	1734	S	23	3	26	0.00030
s__Butyricimonas faecalis	1808	S	23	1	24	0.00028
s__Butyricimonas sp900184685	2120	S	15	1	16	0.00019
s__Odoribacter splanchnicus	1675	S	102	46	148	0.00173
s__Barnesiella intestinihominis	1653	S	202	31	233	0.00273
s__Coprobacter fastidiosus	1735	S	52	10	62	0.00073
s__Coprobacter secundus	2078	S	29	1	30	0.00035
s__Faecalibacterium prausnitzii_E	4255	S	311	112	423	0.00496
s__Faecalibacterium prausnitzii_G	4303	S	217	172	389	0.00456
s__Faecalibacterium prausnitzii_C	4177	S	157	116	273	0.00320
s__Faecalibacterium prausnitzii	4190	S	148	198	346	0.00405
s__Faecalibacterium prausnitzii_D	4326	S	130	232	362	0.00424
s__Faecalibacterium sp900539945	4362	S	98	101	199	0.00233
s__Faecalibacterium prausnitzii_I	4344	S	26	7	33	0.00039
s__Faecalibacterium sp900539885	4327	S	14	7	21	0.00025
s__Gemmiger formicilis	4252	S	576	429	1005	0.01177
s__Gemmiger qucibialis	4176	S	127	80	207	0.00243
s__Gemmiger sp900554145	4404	S	46	7	53	0.00062
s__Gemmiger sp900539695	4257	S	27	11	38	0.00045
s__Gemmiger sp900540595	4276	S	22	5	27	0.00032
s__Ruminococcus_D bicirculans	4247	S	249	63	312	0.00366
s__Ruthenibacterium lactatiformans	4205	S	219	95	314	0.00368
s__Ruminococcus_C callidus	4259	S	81	26	107	0.00125
s__Ruminococcus_C sp000433635	4330	S	35	7	42	0.00049
s__Ruminiclostridium_E siraeum	4182	S	75	39	114	0.00134
s__UBA1394 sp900066845	4416	S	72	19	91	0.00107
s__Anaerotruncus colihominis	4656	S	61	4	65	0.00076
s__Angelakisella sp900547385	4267	S	24	3	27	0.00032
s__CAG-115 sp003531585	4329	S	14	4	18	0.00021
s__ER4 sp000765235	4272	S	212	210	422	0.00494
s__ER4 sp003522105	4351	S	188	51	239	0.00280
s__ER4 sp900317525	4227	S	74	51	125	0.00146
s__ER4 sp900550165	4273	S	56	15	71	0.00083
s__CAG-110 sp000434635	4306	S	118	47	165	0.00193
s__CAG-110 sp003525905	4228	S	67	23	90	0.00105
s__CAG-110 sp900544945	4528	S	36	3	39	0.00046
s__CAG-110 sp900546415	4355	S	19	0	19	0.00022
s__CAG-110 sp900546075	4305	S	15	6	21	0.00025
s__Dysosmobacter sp001916835	4342	S	111	73	184	0.00216
s__Dysosmobacter welbionis	4178	S	75	81	156	0.00183
s__Dysosmobacter sp900542115	4361	S	32	6	38	0.00045
s__Unknown_3154	4546	S	26	5	31	0.00036
s__Dysosmobacter sp004553545	4483	S	16	0	16	0.00019
s__CAG-83 sp900548615	4360	S	106	36	142	0.00166
s__CAG-83 sp000435555	4348	S	38	20	58	0.00068
s__CAG-83 sp003539495	4353	S	25	4	29	0.00034
s__CAG-83 sp900545495	4363	S	20	4	24	0.00028
s__CAG-83 sp900554275	4728	S	20	4	24	0.00028
s__CAG-83 sp900551995	4624	S	13	1	14	0.00016
s__CAG-83 sp900545585	4318	S	12	3	15	0.00018
s__Flavonifractor plautii	4250	S	205	145	350	0.00410
s__CAG-170 sp000432135	4337	S	60	45	105	0.00123
s__CAG-170 sp003516765	4354	S	30	11	41	0.00048
s__CAG-170 sp900553545	4576	S	15	2	17	0.00020
s__CAG-170 sp000436735	4511	S	12	2	14	0.00016
s__Lawsonibacter asaccharolyticus	4500	S	43	13	56	0.00066
s__Lawsonibacter sp900066825	4231	S	29	18	47	0.00055
s__Lawsonibacter sp014287875	4472	S	21	4	25	0.00029
s__Lawsonibacter sp900549405	4471	S	17	2	19	0.00022
s__CAG-103 sp000432375	4237	S	25	29	54	0.00063
s__CAG-103 sp900543625	4238	S	24	6	30	0.00035
s__Intestinimonas butyriciproducens	4654	S	24	3	27	0.00032
s__Intestinimonas massiliensis	4557	S	14	1	15	0.00018
s__UBA738 sp003522945	4271	S	33	4	37	0.00043
s__UBA1777 sp900547315	4468	S	13	2	15	0.00018
s__Ruminococcus_E sp003526955	4209	S	231	218	449	0.00526
s__Ruminococcus_E bromii_B	4211	S	60	62	122	0.00143
s__Ruminococcus_E sp900314705	4261	S	40	3	43	0.00050
s__CAG-217 sp000436335	4179	S	242	20	262	0.00307
s__CAG-177 sp003514385	4206	S	190	36	226	0.00265
s__CAG-488 sp000434055	4279	S	39	10	49	0.00057
s__Eubacterium_R sp000436835	4258	S	32	9	41	0.00048
s__UMGS1071 sp900542375	4224	S	18	2	20	0.00023
s__UBA1417 sp003531055	4188	S	24	5	29	0.00034
s__Clostridium_A leptum	4253	S	22	3	25	0.00029
s__Hydrogeniiclostridium mannosilyticum	4739	S	16	0	16	0.00019
s__CAG-180 sp000432435	4187	S	14	4	18	0.00021
s__UBA737 sp900549055	4390	S	12	2	14	0.00016
s__CAG-724 sp003524145	4407	S	76	36	112	0.00131
s__Agathobaculum butyriciproducens	4229	S	64	13	77	0.00090
s__Agathobaculum sp003481705	4245	S	36	8	44	0.00052
s__Acetatifactor sp900066365	3552	S	501	793	1294	0.01516
s__Acetatifactor sp900066565	3553	S	109	185	294	0.00344
s__Acetatifactor sp003447295	3554	S	12	8	20	0.00023
s__Agathobacter faecis	3574	S	335	491	826	0.00968
s__Agathobacter rectalis	3541	S	250	204	454	0.00532
s__Blautia_A wexlerae_A	3683	S	193	464	657	0.00770
s__Blautia_A massiliensis	3629	S	60	45	105	0.00123
s__Blautia_A sp003477525	5762	S	27	11	38	0.00045
s__Blautia_A faecis	3705	S	18	11	29	0.00034
s__Blautia_A sp003471165	3684	S	12	9	21	0.00025
s__Enterocloster sp000431375	3543	S	88	71	159	0.00186
s__Enterocloster bolteae	3643	S	88	21	109	0.00128
s__Enterocloster aldenensis	3803	S	33	4	37	0.00043
s__Enterocloster lavalensis	3878	S	21	0	21	0.00025
s__Enterocloster clostridioformis	3642	S	13	3	16	0.00019
s__Enterocloster sp001517625	3576	S	10	4	14	0.00016
s__Enterocloster asparagiformis	3877	S	10	0	10	0.00012
s__Lachnospira rogosae_A	3539	S	54	45	99	0.00116
s__Lachnospira sp000436475	3547	S	51	13	64	0.00075
s__Lachnospira eligens_A	3513	S	42	56	98	0.00115
s__Lachnospira sp900316325	3510	S	17	6	23	0.00027
s__Lachnospira sp000437735	3607	S	10	3	13	0.00015
s__Roseburia hominis	3528	S	81	38	119	0.00139
s__Roseburia inulinivorans	3591	S	47	69	116	0.00136
s__Roseburia sp900756925	3951	S	18	1	19	0.00022
s__Roseburia sp003470905	3680	S	14	13	27	0.00032
s__Roseburia intestinalis	3681	S	12	25	37	0.00043
s__Eisenbergiella sp900066775	3520	S	85	37	122	0.00143
s__Eisenbergiella tayi	3648	S	59	2	61	0.00071
s__Coprococcus sp900066115	3609	S	27	23	50	0.00059
s__Coprococcus sp000433075	3689	S	27	1	28	0.00033
s__Coprococcus eutactus_A	3618	S	25	19	44	0.00052
s__Coprococcus eutactus	3619	S	20	18	38	0.00045
s__Eubacterium_G ventriosum	3566	S	89	30	119	0.00139
s__Eubacterium_G sp000435815	3565	S	25	4	29	0.00034
s__Eubacterium_G sp000434315	3519	S	10	2	12	0.00014
s__Unknown_2207	3726	S	67	6	73	0.00086
s__CAG-95 sp000438155	3740	S	61	15	76	0.00089
s__TF01-11 sp003149875	3551	S	35	2	37	0.00043
s__TF01-11 sp003524945	3673	S	31	7	38	0.00045
s__TF01-11 sp003529475	3614	S	26	6	32	0.00037
s__TF01-11 sp001916135	3665	S	18	3	21	0.00025
s__Clostridium_Q symbiosum	3663	S	59	7	66	0.00077
s__Clostridium_Q sp003024715	3569	S	45	28	73	0.00086
s__Mediterraneibacter faecis	3698	S	58	39	97	0.00114
s__Mediterraneibacter torques	3521	S	30	33	63	0.00074
s__Eubacterium_F sp003491505	3568	S	68	14	82	0.00096
s__Hungatella effluvii	3799	S	46	2	48	0.00056
s__Hungatella sp005845265	3602	S	14	1	15	0.00018
s__CAG-81 sp900066535	3675	S	29	27	56	0.00066
s__AM51-8 sp003478275	3526	S	38	8	46	0.00054
s__Dorea_A longicatena_B	3692	S	23	17	40	0.00047
s__Dorea_A longicatena	3693	S	21	24	45	0.00053
s__UBA7182 sp003481535	3864	S	24	7	31	0.00036
s__UBA7182 sp003480725	3874	S	12	2	14	0.00016
s__Faecalimonas phoceensis	3725	S	35	15	50	0.00059
s__UBA11774 sp003507655	3509	S	39	7	46	0.00054
s__Dorea formicigenerans	3873	S	32	13	45	0.00053
s__UBA3402 sp003478355	3820	S	28	3	31	0.00036
s__Anaerostipes hadrus	3523	S	18	13	31	0.00036
s__Clostridium_AP scindens	3649	S	27	1	28	0.00033
s__Butyrivibrio_A crossotus	3742	S	24	4	28	0.00033
s__Fusicatenibacter saccharivorans	3517	S	23	36	59	0.00069
s__GCA-900066755 sp902363085	5755	S	20	4	24	0.00028
s__Muricomes sp000509105	3731	S	19	3	22	0.00026
s__CAG-194 sp000432915	3688	S	23	4	27	0.00032
s__KLE1615 sp900066985	3532	S	20	4	24	0.00028
s__Bariatricus comes	3690	S	19	16	35	0.00041
s__Ruminococcus_B gnavus	3719	S	17	18	35	0.00041
s__UMGS1375 sp900066615	3529	S	14	7	21	0.00025
s__CAG-603 sp900066105	3751	S	13	0	13	0.00015
s__UMGS2037 sp900557385	5813	S	11	0	11	0.00013
s__RUG115 sp900066395	3624	S	11	2	13	0.00015
s__CAG-510 sp000434615	3724	S	10	0	10	0.00012
s__Anaerotignum faecicola	3527	S	60	10	70	0.00082
s__Anaerotignum sp001304995	3652	S	42	5	47	0.00055
s__Anaerotignum lactatifermentans	3653	S	37	6	43	0.00050
s__CAG-273 sp000437855	5131	S	192	69	261	0.00306
s__CAG-273 sp000435755	5137	S	66	24	90	0.00105
s__CAG-269 sp900556345	5198	S	39	4	43	0.00050
s__CAG-269 sp003525075	5119	S	30	14	44	0.00052
s__CAG-269 sp900551615	5163	S	14	3	17	0.00020
s__CAG-269 sp000437215	5183	S	12	2	14	0.00016
s__CAG-492 sp000434335	5118	S	75	11	86	0.00101
s__CAG-145 sp000435715	4829	S	221	13	234	0.00274
s__Intestinibacter bartlettii	4812	S	37	2	39	0.00046
s__Intestinibacter sp900540355	4842	S	17	1	18	0.00021
s__Romboutsia timonensis	4830	S	11	2	13	0.00015
s__CAG-41 sp900066215	4109	S	107	56	163	0.00191
s__Clostridium sp900540255	2426	S	22	8	30	0.00035
s__UBA11524 sp000437595	2251	S	150	18	168	0.00197
s__SFMI01 sp004556155	2252	S	41	2	43	0.00050
s__Firm-11 sp900548145	2322	S	25	3	28	0.00033
s__SFFH01 sp900542395	2245	S	17	4	21	0.00025
s__UMGS1600 sp900553315	2253	S	11	0	11	0.00013
s__Phil1 sp001940855	2259	S	143	25	168	0.00197
s__SFEL01 sp004557245	2260	S	22	5	27	0.00032
s__QALS01 sp900555925	2334	S	60	5	65	0.00076
s__Unknown_0739	2329	S	12	1	13	0.00015
s__Dialister hominis	5305	S	300	57	357	0.00418
s__Dialister sp002320515	5325	S	233	108	341	0.00400
s__Veillonella dispar_A	5346	S	30	27	57	0.00067
s__Veillonella atypica	5361	S	25	2	27	0.00032
s__Veillonella parvula_A	5327	S	24	7	31	0.00036
s__Unknown_3721	5355	S	12	21	33	0.00039
s__Veillonella rogosae	5347	S	11	1	12	0.00014
s__Megasphaera elsdenii	5331	S	14	3	17	0.00020
s__Phascolarctobacterium faecium	1515	S	320	75	395	0.00463
s__Acidaminococcus provencensis	1559	S	151	1	152	0.00178
s__Phascolarctobacterium_A succinatutens	1517	S	40	33	73	0.00086
s__Megamonas funiformis	5089	S	273	31	304	0.00356
s__Escherichia coli_D	3231	S	485	99	584	0.00684
s__Klebsiella variicola	3229	S	90	26	116	0.00136
s__Klebsiella pneumoniae	3228	S	10	5	15	0.00018
s__Citrobacter portucalensis	3262	S	30	0	30	0.00035
s__Citrobacter_A amalonaticus	3334	S	17	0	17	0.00020
s__Sutterella wadsworthensis	2126	S	402	50	452	0.00530
s__Sutterella sp900764215	5586	S	11	0	11	0.00013
s__Sutterella wadsworthensis_A	2132	S	10	1	11	0.00013
s__Duodenibacillus sp900538905	2130	S	14	3	17	0.00020
s__Oxalobacter formigenes	2192	S	13	0	13	0.00015
s__Faecalibacillus intestinalis	3362	S	130	109	239	0.00280
s__Faecalibacillus faecis	3363	S	13	4	17	0.00020
s__Catenibacterium sp000437715	3349	S	94	27	121	0.00142
s__Catenibacterium mitsuokai	3350	S	19	15	34	0.00040
s__Coprobacillus cateniformis	3365	S	90	17	107	0.00125
s__Erysipelatoclostridium ramosum	3368	S	11	5	16	0.00019
s__Holdemanella sp002299315	3356	S	36	21	57	0.00067
s__Clostridium_AQ innocuum	3354	S	11	0	11	0.00013
s__CAG-302 sp001916775	4938	S	76	20	96	0.00112
s__CAG-302 sp000431795	4941	S	29	13	42	0.00049
s__CAG-433 sp000433675	4959	S	32	12	44	0.00052
s__CAG-1193 sp900550145	4964	S	23	4	27	0.00032
s__Streptococcus salivarius	3957	S	49	23	72	0.00084
s__Streptococcus parasanguinis_B	3985	S	21	7	28	0.00033
s__CAG-288 sp000437395	5042	S	18	4	22	0.00026
s__CAG-313 sp003539625	4099	S	16	5	21	0.00025
s__Bifidobacterium adolescentis	1567	S	188	318	506	0.00593
s__Bifidobacterium pseudocatenulatum	1585	S	83	112	195	0.00228
s__Bifidobacterium infantis	1566	S	17	42	59	0.00069
s__Eggerthella lenta	3086	S	31	20	51	0.00060
s__Bilophila wadsworthia	3183	S	620	94	714	0.00837
s__Desulfovibrio sp900319575	3186	S	19	1	20	0.00023
s__Desulfovibrio sp900556755	3188	S	11	1	12	0.00014
s__Akkermansia muciniphila	5395	S	324	53	377	0.00442
s__Fusobacterium_A mortiferum	3417	S	10	1	11	0.00013
Homo sapiens	128919	S	17	0	17	0.00020